PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G133900.1.p
Common NameGLYMA_18G133900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 140aa    MW: 16521.8 Da    PI: 6.7495
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G133900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.63.2e-2149139291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          fY  YA+  GFs+rksk  k+  +ge t++tf Cs++g re++  ++e+++    + tr++C+ak++v+ +k   +wev++++ eHnH+l
  Glyma.18G133900.1.p  49 FYYWYARINGFSLRKSKVVKN-CKGEKTQQTFLCSRQGVREDKGLTNETRKCeLINDTRCECNAKFVVHVMKnYRRWEVKEFSDEHNHKL 137
                          9****************9999.77889***************9988444443156789*************9899**************9 PP

                 FAR1  90 ap 91 
                           p
  Glyma.18G133900.1.p 138 LP 139
                          75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1849139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSFMNFNYCF ALLDEDEFEE KPSGEPIIIN GLVDIGDINM SNLEATYLFY YWYARINGFS  60
LRKSKVVKNC KGEKTQQTFL CSRQGVREDK GLTNETRKCE LINDTRCECN AKFVVHVMKN  120
YRRWEVKEFS DEHNHKLLPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353951e-165AC235395.1 Glycine max strain Williams 82 clone GM_WBb0118D03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468553.12e-30FAR1 DNA-binding domain protein
TrEMBLA0A0R0F0E81e-102A0A0R0F0E8_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA18G18095.18e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-09FAR1-related sequence 10